Human vs Turkey Translated Blat alignments

Human (Homo sapiens, GRCh37) and Turkey (Meleagris gallopavo, UMD2) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 61. Human was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

Minimum score (minScore) 30
Database type (t) dnax
Query type (q) dnax
Mask out repeats (mask) lower
Mask out repeats on query (qmask) lower

Results

Number of alignment blocks: 321105

Genome coverage(bp) Coding exon coverage (bp)
Human
37,853,597 out of 3,098,825,702 19,576,598 out of 35,483,623
Turkey
739,783 out of 1,061,982,190 443,803 out of 22,787,503