Human (Homo sapiens, GRCh37) and Medaka (Oryzias latipes, MEDAKA1) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 55. Human was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsMinimum score (minScore) | 30 |
Database type (t) | dnax |
Query type (q) | dnax |
Mask out repeats (mask) | lower |
Mask out repeats on query (qmask) | lower |
Number of alignment blocks: 189355
Genome coverage(bp) | Coding exon coverage (bp) | |
---|---|---|
Human | ![]() |
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20,519,180 out of 3,098,825,702 | 15,012,710 out of 35,483,623 | |
Medaka | ![]() |
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14,902,708 out of 868,983,502 | 11,956,141 out of 30,193,605 |