Chicken (Gallus gallus, WASHUC2) and Anole Lizard (Anolis carolinensis, AnoCar2.0) were aligned using the LastZ alignment algorithm (LastZ) in Ensembl release 61. Chicken was used as the reference species. After running LastZ , the raw LastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsGap open penalty (O) | 400 |
Gap extend penalty (E) | 30 |
HSP threshold (K) | 3000 |
Threshold for gapped extension (L) | 3000 |
Threshold for alignments between gapped alignment blocks (H) | 2200 |
Masking count (M) | 50 |
Seed and Transition value (T) | 1 |
Scoring matrix (Q) | Default |
Number of alignment blocks: 267654
Genome coverage(bp) | Coding exon coverage (bp) | |
---|---|---|
Chicken | ![]() |
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77,677,283 out of 1,100,480,441 | 21,206,752 out of 24,644,731 | |
Anole Lizard | ![]() |
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72,765,433 out of 1,799,126,364 | 19,569,991 out of 27,358,934 |