Human (Homo sapiens, GRCh37) and Rabbit (Oryctolagus cuniculus, oryCun2) were aligned using the LastZ alignment algorithm (LastZ) in Ensembl release 60. Human was used as the reference species. After running LastZ , the raw LastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsGap open penalty (O) | 400 |
Gap extend penalty (E) | 30 |
HSP threshold (K) | 3000 |
Threshold for gapped extension (L) | 3000 |
Threshold for alignments between gapped alignment blocks (H) | 2200 |
Masking count (M) | 50 |
Seed and Transition value (T) | 1 |
Scoring matrix (Q) | Default |
Number of alignment blocks: 2036094
Genome coverage(bp) | Coding exon coverage (bp) | |
---|---|---|
Human | ![]() |
![]() |
1,326,966,577 out of 3,098,825,702 | 32,930,581 out of 35,483,623 | |
Rabbit | ![]() |
![]() |
1,221,978,809 out of 2,737,473,256 | 27,856,841 out of 29,950,200 |