Epetra_FEVector.cpp

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#include <Epetra_ConfigDefs.h>
#include <Epetra_FEVector.h>
 
#include <Epetra_LocalMap.h>
#include <Epetra_Comm.h>
#include <Epetra_Map.h>
#include <Epetra_Import.h>
#include <Epetra_Export.h>
#include <Epetra_Util.h>
#include <Epetra_IntSerialDenseVector.h>
#include <Epetra_SerialDenseVector.h>
 
#include <algorithm>
 
//----------------------------------------------------------------------------
Epetra_FEVector::Epetra_FEVector(const Epetra_BlockMap& map,
                                 int numVectors,
         bool ignoreNonLocalEntries)
  : Epetra_MultiVector(map, numVectors),
    myFirstID_(0),
    myNumIDs_(0),
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
    nonlocalIDs_int_(),
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
    nonlocalIDs_LL_(),
#endif
    nonlocalElementSize_(),
    nonlocalCoefs_(),
    nonlocalMap_(0),
    exporter_(0),
    nonlocalVector_(0),
    ignoreNonLocalEntries_(ignoreNonLocalEntries)
{
  myFirstID_ = map.MinMyGID64();
  myNumIDs_ = map.NumMyElements();
  nonlocalCoefs_.resize(numVectors);
}
 
//----------------------------------------------------------------------------
Epetra_FEVector::Epetra_FEVector(Epetra_DataAccess CV, const Epetra_BlockMap& theMap,
                                 double *A, int MyLDA, int theNumVectors,
                                 bool ignoreNonLocalEntries)
 : Epetra_MultiVector(CV, theMap, A, MyLDA, theNumVectors),
    myFirstID_(0),
    myNumIDs_(0),
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
    nonlocalIDs_int_(),
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
    nonlocalIDs_LL_(),
#endif
    nonlocalElementSize_(),
    nonlocalCoefs_(),
    nonlocalMap_(0),
    exporter_(0),
    nonlocalVector_(0),
    ignoreNonLocalEntries_(ignoreNonLocalEntries)
{
  myFirstID_ = theMap.MinMyGID64();
  myNumIDs_ = theMap.NumMyElements();
  nonlocalCoefs_.resize(theNumVectors);
}
 
//----------------------------------------------------------------------------
Epetra_FEVector::Epetra_FEVector(Epetra_DataAccess CV, const Epetra_BlockMap& theMap,
                                 double **ArrayOfPointers, int theNumVectors,
                                 bool ignoreNonLocalEntries)
 : Epetra_MultiVector(CV, theMap, ArrayOfPointers, theNumVectors),
    myFirstID_(0),
    myNumIDs_(0),
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
    nonlocalIDs_int_(),
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
    nonlocalIDs_LL_(),
#endif
    nonlocalElementSize_(),
    nonlocalCoefs_(),
    nonlocalMap_(0),
    exporter_(0),
    nonlocalVector_(0),
    ignoreNonLocalEntries_(ignoreNonLocalEntries)
{
  myFirstID_ = theMap.MinMyGID64();
  myNumIDs_ = theMap.NumMyElements();
  nonlocalCoefs_.resize(theNumVectors);
}
 
//----------------------------------------------------------------------------
Epetra_FEVector::Epetra_FEVector(const Epetra_FEVector& source)
  : Epetra_MultiVector(source),
    myFirstID_(0),
    myNumIDs_(0),
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
    nonlocalIDs_int_(),
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
    nonlocalIDs_LL_(),
#endif
    nonlocalElementSize_(),
    nonlocalCoefs_(),
    nonlocalMap_(0),
    exporter_(0),
    nonlocalVector_(0),
    ignoreNonLocalEntries_(source.ignoreNonLocalEntries_)
{
  *this = source;
}
 
//----------------------------------------------------------------------------
Epetra_FEVector::~Epetra_FEVector()
{
  destroyNonlocalData();
  destroyNonlocalMapAndExporter();
 
  nonlocalCoefs_.clear();
}
 
//----------------------------------------------------------------------------
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int Epetra_FEVector::SumIntoGlobalValues(int numIDs, const int* GIDs,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, values, true, vectorIndex) );
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int Epetra_FEVector::SumIntoGlobalValues(int numIDs, const long long* GIDs,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, values, true, vectorIndex) );
}
#endif
//----------------------------------------------------------------------------
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int Epetra_FEVector::SumIntoGlobalValues(const Epetra_IntSerialDenseVector& GIDs,
                       const Epetra_SerialDenseVector& values,
                                         int vectorIndex)
{
  if (GIDs.Length() != values.Length()) {
    return(-1);
  }
 
  return( inputValues( GIDs.Length(), GIDs.Values(), values.Values(), true,
                       vectorIndex ) );
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int Epetra_FEVector::SumIntoGlobalValues(const Epetra_LongLongSerialDenseVector& GIDs,
                       const Epetra_SerialDenseVector& values,
                                         int vectorIndex)
{
  if (GIDs.Length() != values.Length()) {
    return(-1);
  }
 
  return( inputValues( GIDs.Length(), GIDs.Values(), values.Values(), true,
                       vectorIndex ) );
}
#endif
//----------------------------------------------------------------------------
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int Epetra_FEVector::SumIntoGlobalValues(int numIDs, const int* GIDs,
           const int* numValuesPerID,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, numValuesPerID, values, true,
                       vectorIndex) );
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int Epetra_FEVector::SumIntoGlobalValues(int numIDs, const long long* GIDs,
           const int* numValuesPerID,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, numValuesPerID, values, true,
                       vectorIndex) );
}
#endif
//----------------------------------------------------------------------------
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int Epetra_FEVector::ReplaceGlobalValues(int numIDs, const int* GIDs,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, values, false,
                       vectorIndex) );
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int Epetra_FEVector::ReplaceGlobalValues(int numIDs, const long long* GIDs,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, values, false,
                       vectorIndex) );
}
#endif
//----------------------------------------------------------------------------
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int Epetra_FEVector::ReplaceGlobalValues(const Epetra_IntSerialDenseVector& GIDs,
                       const Epetra_SerialDenseVector& values,
                                         int vectorIndex)
{
  if (GIDs.Length() != values.Length()) {
    return(-1);
  }
 
  return( inputValues( GIDs.Length(), GIDs.Values(), values.Values(), false,
                       vectorIndex) );
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int Epetra_FEVector::ReplaceGlobalValues(const Epetra_LongLongSerialDenseVector& GIDs,
                       const Epetra_SerialDenseVector& values,
                                         int vectorIndex)
{
  if (GIDs.Length() != values.Length()) {
    return(-1);
  }
 
  return( inputValues( GIDs.Length(), GIDs.Values(), values.Values(), false,
                       vectorIndex) );
}
#endif
//----------------------------------------------------------------------------
template<typename int_type>
int Epetra_FEVector::inputValues(int numIDs,
                                 const int_type* GIDs,
                                 const double* values,
                                 bool suminto,
                                 int vectorIndex)
{
 //Important note!! This method assumes that there is only 1 point
 //associated with each element (GID), and writes to offset 0 in that
 //GID's block.
 
  for(int i=0; i<numIDs; ++i) {
    if (Map().MyGID(GIDs[i])) {
      if (suminto) {
        SumIntoGlobalValue(GIDs[i], 0, vectorIndex, values[i]);
      }
      else {
        ReplaceGlobalValue(GIDs[i], 0, vectorIndex, values[i]);
      }
    }
    else {
      if (!ignoreNonLocalEntries_) {
        EPETRA_CHK_ERR( inputNonlocalValue(GIDs[i], values[i], suminto,
              vectorIndex) );
      }
    }
  }
 
  return(0);
}
 
//----------------------------------------------------------------------------
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int Epetra_FEVector::ReplaceGlobalValues(int numIDs, const int* GIDs,
           const int* numValuesPerID,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, numValuesPerID, values, false,
                       vectorIndex) );
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int Epetra_FEVector::ReplaceGlobalValues(int numIDs, const long long* GIDs,
           const int* numValuesPerID,
                       const double* values,
                                         int vectorIndex)
{
  return( inputValues( numIDs, GIDs, numValuesPerID, values, false,
                       vectorIndex) );
}
#endif
//----------------------------------------------------------------------------
template<typename int_type>
int Epetra_FEVector::inputValues(int numIDs,
                                 const int_type* GIDs,
                                 const int* numValuesPerID,
                                 const double* values,
                                 bool suminto,
                                 int vectorIndex)
{
  if(!Map().template GlobalIndicesIsType<int_type>())
  throw ReportError("Epetra_FEVector::inputValues mismatch between argument types (int/long long) and map type.", -1);
 
  int offset=0;
  for(int i=0; i<numIDs; ++i) {
    int numValues = numValuesPerID[i];
    if (Map().MyGID(GIDs[i])) {
      if (suminto) {
        for(int j=0; j<numValues; ++j) {
          SumIntoGlobalValue(GIDs[i], j, vectorIndex, values[offset+j]);
        }
      }
      else {
        for(int j=0; j<numValues; ++j) {
          ReplaceGlobalValue(GIDs[i], j, vectorIndex, values[offset+j]);
        }
      }
    }
    else {
      if (!ignoreNonLocalEntries_) {
        EPETRA_CHK_ERR( inputNonlocalValues(GIDs[i], numValues,
              &(values[offset]), suminto,
              vectorIndex) );
      }
    }
    offset += numValues;
  }
 
  return(0);
}
 
//----------------------------------------------------------------------------
template<typename int_type>
int Epetra_FEVector::inputNonlocalValue(int_type GID, double value, bool suminto,
                                        int vectorIndex)
{
  return inputNonlocalValues(GID, 1, &value, suminto, vectorIndex);
}
 
//----------------------------------------------------------------------------
template<typename int_type>
int Epetra_FEVector::inputNonlocalValues(int_type GID, int numValues,
                                         const double* values, bool suminto,
                                         int vectorIndex)
{
  if(!Map().template GlobalIndicesIsType<int_type>())
  throw ReportError("Epetra_FEVector::inputValues mismatch between argument types (int/long long) and map type.", -1);
 
 
  //find offset of GID in nonlocalIDs_var
 
  std::vector<int_type>& nonlocalIDs_var = nonlocalIDs<int_type>();
 
  typename std::vector<int_type>::iterator it = std::lower_bound(nonlocalIDs_var.begin(), nonlocalIDs_var.end(), GID);
  int offset = (int) (it - nonlocalIDs_var.begin());
  int insertPoint = offset;
  if (it == nonlocalIDs_var.end() || *it != GID) {
    offset = -1;
  }
 
  int elemSize = Map().MaxElementSize();
  if (offset >= 0) {
    //if offset >= 0 (meaning GID was found)
    //  put value in nonlocalCoefs_[vectorIndex][offset*elemSize]
 
    if (numValues != nonlocalElementSize_[offset]) {
      std::cerr << "Epetra_FEVector ERROR: block-size for GID " << GID << " is "
     << numValues<<" which doesn't match previously set block-size of "
     << nonlocalElementSize_[offset] << std::endl;
      return(-1);
    }
 
    offset = offset*elemSize;
 
    if (suminto) {
      for(int j=0; j<numValues; ++j) {
        nonlocalCoefs_[vectorIndex][offset+j] += values[j];
      }
    }
    else {
      for(int j=0; j<numValues; ++j) {
        nonlocalCoefs_[vectorIndex][offset+j] = values[j];
      }
    }
  }
  else {
    //else
    //  insert GID in nonlocalIDs_
    //  insert numValues   in nonlocalElementSize_
    //  insert values in nonlocalCoefs_
 
    nonlocalIDs_var.insert(it, GID);
    nonlocalElementSize_.insert(nonlocalElementSize_.begin()+insertPoint, numValues);
 
    //to keep nonlocalCoefs_[i] the same length for each vector in the multi-
    //vector, we'll insert positions for each vector even though values are
    //only being set for one of them...
    for(int i=0; i<NumVectors(); ++i) {
      for(int ii=0; ii<elemSize; ++ii) {
        nonlocalCoefs_[i].insert(nonlocalCoefs_[i].begin()+insertPoint*elemSize+ii, 0.0);
      }
    }
 
    for(int j=0; j<numValues; ++j) {
      nonlocalCoefs_[vectorIndex][insertPoint*elemSize+j] = values[j];
    }
  }
 
  return(0);
}
 
//----------------------------------------------------------------------------
template<typename int_type>
int Epetra_FEVector::GlobalAssemble(Epetra_CombineMode mode,
                                    bool reuse_map_and_exporter)
{
  //In this method we need to gather all the non-local (overlapping) data
  //that's been input on each processor, into the (probably) non-overlapping
  //distribution defined by the map that 'this' vector was constructed with.
 
  //We don't need to do anything if there's only one processor or if
  //ignoreNonLocalEntries_ is true.
  if (Map().Comm().NumProc() < 2 || ignoreNonLocalEntries_) {
    return(0);
  }
 
  if (nonlocalMap_ == 0 || !reuse_map_and_exporter) {
    createNonlocalMapAndExporter<int_type>();
  }
 
  Epetra_MultiVector& nonlocalVector = *nonlocalVector_;
  nonlocalVector.PutScalar(0.0);
 
  int elemSize = Map().MaxElementSize();
  for(int vi=0; vi<NumVectors(); ++vi) {
    for(size_t i=0; i<nonlocalIDs<int_type>().size(); ++i) {
      for(int j=0; j<nonlocalElementSize_[i]; ++j) {
        nonlocalVector.ReplaceGlobalValue(nonlocalIDs<int_type>()[i], j, vi,
                                          nonlocalCoefs_[vi][i*elemSize+j]);
      }
    }
  }
 
  EPETRA_CHK_ERR( Export(nonlocalVector, *exporter_, mode) );
 
  if (reuse_map_and_exporter) {
    zeroNonlocalData<int_type>();
  }
  else {
    destroyNonlocalData();
  }
 
  return(0);
}
 
int Epetra_FEVector::GlobalAssemble(Epetra_CombineMode mode,
                                    bool reuse_map_and_exporter)
{
  if(Map().GlobalIndicesInt())
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
    return GlobalAssemble<int>(mode, reuse_map_and_exporter);
#else
    throw ReportError("Epetra_FEVector::GlobalAssemble: ERROR, GlobalIndicesInt but no API for it.",-1);
#endif
 
  if(Map().GlobalIndicesLongLong())
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
    return GlobalAssemble<long long>(mode, reuse_map_and_exporter);
#else
    throw ReportError("Epetra_FEVector::GlobalAssemble: ERROR, GlobalIndicesLongLong but no API for it.",-1);
#endif
 
  throw ReportError("Epetra_FEVector::GlobalAssemble: Internal error, unable to determine global index type of maps", -1);
}
//----------------------------------------------------------------------------
template<typename int_type>
void Epetra_FEVector::createNonlocalMapAndExporter()
{
  std::vector<int_type>& nonlocalIDs_var = nonlocalIDs<int_type>();
  delete nonlocalMap_;
  int_type* nlIDptr = Epetra_Util_data_ptr(nonlocalIDs_var);
  int* nlElSzptr = Epetra_Util_data_ptr(nonlocalElementSize_);
  nonlocalMap_ = new Epetra_BlockMap ((int_type) -1, (int) nonlocalIDs_var.size(), nlIDptr,
                                      nlElSzptr, (int_type) Map().IndexBase64(), Map().Comm());
  delete exporter_;
  exporter_ = new Epetra_Export (*nonlocalMap_, Map());
 
  delete nonlocalVector_;
  nonlocalVector_ = new Epetra_MultiVector (*nonlocalMap_, NumVectors());
}
 
//----------------------------------------------------------------------------
void Epetra_FEVector::destroyNonlocalMapAndExporter()
{
  delete nonlocalMap_;    nonlocalMap_ = 0;
  delete exporter_;       exporter_ = 0;
  delete nonlocalVector_; nonlocalVector_ = 0;
}
 
//----------------------------------------------------------------------------
Epetra_FEVector& Epetra_FEVector::operator=(const Epetra_FEVector& source)
{
  if (this == &source) {
    // Don't allow self-assignment, since the allocations and
    // deallocations in the code below assume that source is a
    // different object than *this.
    return *this;
  }
  // This redundantly checks for self-assignment, but the check is
  // inexpensive (just a pointer comparison).
  Epetra_MultiVector::Assign(source);
 
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
  nonlocalIDs_int_ = source.nonlocalIDs_int_;
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
  nonlocalIDs_LL_ = source.nonlocalIDs_LL_;
#endif
  nonlocalElementSize_ = source.nonlocalElementSize_;
  nonlocalCoefs_ = source.nonlocalCoefs_;
 
  return(*this);
}
 
//----------------------------------------------------------------------------
template<typename int_type>
void Epetra_FEVector::zeroNonlocalData()
{
  if (nonlocalIDs<int_type>().size() > 0) {
    int maxelemSize = Map().MaxElementSize();
    for(int vi=0; vi<NumVectors(); ++vi) {
      for(size_t i=0; i<nonlocalIDs<int_type>().size(); ++i) {
        int elemSize = nonlocalElementSize_[i];
        for(int j=0; j<elemSize; ++j) {
          nonlocalCoefs_[vi][i*maxelemSize+j] = 0.0;
        }
      }
    }
  }
}
 
//----------------------------------------------------------------------------
void Epetra_FEVector::destroyNonlocalData()
{
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
  nonlocalIDs_int_.clear();
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
  nonlocalIDs_LL_.clear();
#endif
  nonlocalElementSize_.clear();
 
  if (nonlocalCoefs_.size() > 0) {
    for(int i=0; i<NumVectors(); ++i) {
      nonlocalCoefs_[i].clear();
    }
  }
}