Ifpack_LinePartitioner.cpp

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//       Ifpack: Object-Oriented Algebraic Preconditioner Package
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#include "Ifpack_ConfigDefs.h"
#include "Ifpack_Partitioner.h"
#include "Ifpack_OverlappingPartitioner.h"
#include "Ifpack_LinePartitioner.h"
#include "Ifpack_Graph.h"
#include "Epetra_Util.h"
#include <cfloat>
 
// ============================================================================
 
inline double compute_distance_coordinates(double x0, double y0, double z0, int nn, const double*xvals,const double*yvals,const double*zvals) {
  double mydist=0.0;
  if(xvals) mydist += (x0 - xvals[nn]) * (x0 - xvals[nn]);
  if(yvals) mydist += (y0 - yvals[nn]) * (y0 - yvals[nn]);
  if(zvals) mydist += (z0 - zvals[nn]) * (z0 - zvals[nn]);
  return sqrt(mydist);
}  
 
inline double compute_distance_matrix_entries(const double *vals, int id, int NumEqns) {
  double sum=0.0;
  for(int i=0; i<NumEqns; i++)
    sum+=std::abs(vals[id+i]);
  return sum;
}
 
 
// ============================================================================
inline void Ifpack_LinePartitioner::local_automatic_line_search(int NumEqns, int * blockIndices, int last, int next, int LineID, double tol, int *itemp, double * dtemp) const {
  double *xvals=xcoord_, *yvals=ycoord_, *zvals=zcoord_;
 
  int N = NumMyRows();
 
  int allocated_space = MaxNumEntries();
  int * cols    = itemp;
  int * indices = &itemp[allocated_space];
  double * merit= dtemp;
  double * vals = &dtemp[allocated_space];
 
  while (blockIndices[next] == -1) {
    // Get the next row
    int n=0;
    int neighbors_in_line=0;
 
    if(mode_==MATRIX_ENTRIES) Matrix_->ExtractMyRowCopy(next,allocated_space,n,vals,cols);
    else Graph_->ExtractMyRowCopy(next,allocated_space,n,cols);
 
    // Coordinate distance info
    double x0 = (xvals) ? xvals[next/NumEqns] : 0.0;
    double y0 = (yvals) ? yvals[next/NumEqns] : 0.0;
    double z0 = (zvals) ? zvals[next/NumEqns] : 0.0;
 
    // Calculate neighbor distances & sort
    int neighbor_len=0;
    for(int i=0; i<n; i+=NumEqns) {
      if(cols[i] >=N) continue; // Check for off-proc entries
      int nn = cols[i] / NumEqns;
      if(blockIndices[nn]==LineID) neighbors_in_line++;      
      if(mode_==COORDINATES) merit[neighbor_len] = compute_distance_coordinates(x0,y0,z0,nn,xvals,yvals,zvals);
      else {
  merit[neighbor_len] =  - compute_distance_matrix_entries(vals,i,NumEqns); // Make this negative here, so we can use the same if tests at coordinates
  // Boost the diagonal here to ensure it goes first
  if(cols[i]==next) merit[neighbor_len] = -DBL_MAX;
      }
 
      indices[neighbor_len]=cols[i];
      neighbor_len++;
    }
    // If more than one of my neighbors is already in this line.  I
    // can't be because I'd create a cycle
    if(neighbors_in_line > 1) break;
 
    // Otherwise add me to the line 
    for(int k=0; k<NumEqns; k++) 
      blockIndices[next + k] = LineID;
    
    // Try to find the next guy in the line (only check the closest two that aren't element 0 (diagonal))
    Epetra_Util::Sort(true,neighbor_len,merit,0,0,1,&indices,0,0);
 
    if(neighbor_len > 2 && indices[1] != last && blockIndices[indices[1]] == -1 && merit[1]  < tol*merit[neighbor_len-1]) {
      last=next;
      next=indices[1];
    }
    else if(neighbor_len > 3 && indices[2] != last && blockIndices[indices[2]] == -1 && merit[2] < tol*merit[neighbor_len-1]) {
      last=next;
      next=indices[2];
    }
    else {
      // I have no further neighbors in this line
      break;
    }
  }
}
 
// ============================================================================
int Ifpack_LinePartitioner::Compute_Blocks_AutoLine(int * blockIndices) const {
  double *xvals=xcoord_, *yvals=ycoord_, *zvals=zcoord_;
  int NumEqns = NumEqns_;
  double tol = threshold_;
  int N = NumMyRows();
  int allocated_space = MaxNumEntries();
    
  int * cols    = new int[2*allocated_space];
  int * indices = &cols[allocated_space];
  double * merit = new double[2*allocated_space];
  double * vals = &merit[allocated_space];
 
  int * itemp   = new int[2*allocated_space];
  double *dtemp = new double[2*allocated_space];
 
 
  int num_lines = 0;
 
  for(int i=0; i<N; i+=NumEqns) {
    int nz=0;
    // Short circuit if I've already been blocked
    if(blockIndices[i] !=-1) continue;
 
    // Get neighbors and sort by distance
    if(mode_==MATRIX_ENTRIES) Matrix_->ExtractMyRowCopy(i,allocated_space,nz,vals,cols);
    else Graph_->ExtractMyRowCopy(i,allocated_space,nz,cols);
 
    double x0 = (xvals) ? xvals[i/NumEqns] : 0.0;
    double y0 = (yvals) ? yvals[i/NumEqns] : 0.0;
    double z0 = (zvals) ? zvals[i/NumEqns] : 0.0;
 
    int neighbor_len=0;
    for(int j=0; j<nz; j+=NumEqns) {
      int nn = cols[j] / NumEqns;
      if(cols[j] >=N) continue; // Check for off-proc entries
      if(mode_==COORDINATES) merit[neighbor_len] = compute_distance_coordinates(x0,y0,z0,nn,xvals,yvals,zvals);
      else {
  merit[neighbor_len] =  - compute_distance_matrix_entries(vals,j,NumEqns); // Make this negative here, so we can use the same if tests at coordinates
  // Boost the diagonal here to ensure it goes first
  if(cols[j]==i)   merit[neighbor_len] = -DBL_MAX;
      }
      indices[neighbor_len] = cols[j];
      neighbor_len++;
    }
 
    Epetra_Util::Sort(true,neighbor_len,merit,0,0,1,&indices,0,0);
 
    // Number myself
    for(int k=0; k<NumEqns; k++)
      blockIndices[i + k] = num_lines;
 
    // Fire off a neighbor line search (nearest neighbor)
    if(neighbor_len > 2 && merit[1] < tol*merit[neighbor_len-1]) {      
      local_automatic_line_search(NumEqns,blockIndices,i,indices[1],num_lines,tol,itemp,dtemp);
    }
    // Fire off a neighbor line search (second nearest neighbor)
    if(neighbor_len > 3 && merit[2] < tol*merit[neighbor_len-1]) {
      local_automatic_line_search(NumEqns,blockIndices,i,indices[2],num_lines,tol,itemp,dtemp);
    }
 
    num_lines++;
  }
  
  // Cleanup
  delete [] cols;
  delete [] merit;
  delete [] itemp;
  delete [] dtemp;
 
  return num_lines;
}
//==============================================================================
int Ifpack_LinePartitioner::ComputePartitions()
{
  // Sanity Checks
  if(mode_==COORDINATES &&  !xcoord_ && !ycoord_ && !zcoord_)  IFPACK_CHK_ERR(-1);
  if((int)Partition_.size() != NumMyRows())  IFPACK_CHK_ERR(-2);
 
  // Short circuit
  if(Partition_.size() == 0) {NumLocalParts_ = 0; return 0;}
 
  // Set partitions to -1 to initialize algorithm
  for(int i=0; i<NumMyRows(); i++)
    Partition_[i] = -1;
 
  // Use the auto partitioner 
  NumLocalParts_ = Compute_Blocks_AutoLine(&Partition_[0]);
 
  // Resize Parts_
  Parts_.resize(NumLocalParts_);
  return(0);
}