UnitTestBucket.cpp

/*------------------------------------------------------------------------*/
/*         _        Copyright 2010 Sandia Corporation.                     */
/*  Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive   */
/*  license for use of this work by or on behalf of the U.S. Government.  */
/*  Export of this program may require a license from the                 */
/*  United States Government.                                             */
/*------------------------------------------------------------------------*/
 
 
#include <sstream>
#include <stdexcept>
 
#include <stk_util/unit_test_support/stk_utest_macros.hpp>
 
#include <stk_util/parallel/Parallel.hpp>
 
#include <stk_mesh/base/MetaData.hpp>
#include <stk_mesh/base/BulkData.hpp>
#include <stk_mesh/base/GetEntities.hpp>
#include <stk_mesh/base/Field.hpp>
#include <stk_mesh/base/FieldData.hpp>
#include <stk_mesh/base/Comm.hpp>
#include <stk_mesh/base/EntityComm.hpp>
#include <stk_mesh/base/Part.hpp>
#include <stk_mesh/base/Entity.hpp>
#include <stk_mesh/base/GetBuckets.hpp>
#include <stk_mesh/base/Bucket.hpp>
#include <stk_mesh/base/BulkModification.hpp>
#include <stk_mesh/base/Entity.hpp>
#include <stk_mesh/base/Bucket.hpp>
#include <stk_mesh/base/Ghosting.hpp>
 
#include <stk_mesh/fem/FEMMetaData.hpp>
#include <stk_mesh/fem/FEMHelpers.hpp>
 
#include <stk_mesh/baseImpl/BucketImpl.hpp>
 
#include <stk_mesh/fixtures/BoxFixture.hpp>
 
#include <Shards_BasicTopologies.hpp>
 
using stk_classic::mesh::fem::FEMMetaData;
using stk_classic::mesh::MetaData;
using stk_classic::mesh::BulkData;
using stk_classic::mesh::Part;
using stk_classic::mesh::PartVector;
using stk_classic::mesh::EntityRank;
using stk_classic::mesh::EntityId;
using stk_classic::mesh::PairIterEntityComm;
using stk_classic::mesh::Entity;
using stk_classic::mesh::Bucket;
using stk_classic::mesh::BucketIterator;
using stk_classic::mesh::Selector;
using stk_classic::mesh::Field;
using stk_classic::mesh::FieldBase;
using stk_classic::mesh::put_field;
 
typedef Field<double> ScalarFieldType;
 
namespace {
 
const EntityRank NODE_RANK = FEMMetaData::NODE_RANK;
 
STKUNIT_UNIT_TEST(UnitTestingOfBucket, testBucket)
{
  // Unit test the Part functionality in isolation:
 
  stk_classic::ParallelMachine pm = MPI_COMM_WORLD;
  MPI_Barrier( pm );
 
  // Create a mesh for testing buckets...
 
  // Create dummy names for entity ranks to be given to MetaData
  std::vector<std::string> entity_names(10);
  for ( size_t i = 0 ; i < 10 ; ++i ) {
    std::ostringstream name ;
    name << "EntityRank" << i ;
    entity_names[i] = name.str();
  }
 
  // Create MetaData, BulkData
  unsigned max_bucket_size = 4;
  stk_classic::mesh::fixtures::BoxFixture fixture(pm, max_bucket_size, entity_names);
  FEMMetaData& meta = fixture.fem_meta();
  BulkData& bulk = fixture.bulk_data();
  const EntityRank element_rank = meta.element_rank();
  // Create two scalar fields, temperature and volume. Put temperature
  // on all the nodes and put volume on all the elements.
  unsigned number_of_states = 4;
 
  ScalarFieldType & temperature =
    meta.declare_field < ScalarFieldType > ( "temperature" , number_of_states );
  ScalarFieldType & volume =
 
    meta.declare_field < ScalarFieldType > ( "volume" , number_of_states );
  Part & universal     = meta.universal_part ();
  put_field ( temperature , NODE_RANK , universal );
  put_field ( volume , element_rank  , universal );
  meta.commit();
 
  // Generate the mesh
  int root_box[3][2] = { { 0,4 } , { 0,5 } , { 0,6 } };
  int local_box[3][2] = { { 0,0 } , { 0,0 } , { 0,0 } };
  bulk.modification_begin();
  fixture.generate_boxes( root_box, local_box );
  STKUNIT_ASSERT(bulk.modification_end());
 
  //  First, test for streaming IO;
  {
    std::string gold1;
    // Parallel and Serial runs have different part intersections for the first
    // bucket
    if ( bulk.parallel_size() == 1 )
       gold1 = "Bucket( EntityRank0 : {UNIVERSAL} {OWNS} )";
    else
       gold1 = "Bucket( EntityRank0 : {UNIVERSAL} )";
    Bucket *b1 = bulk.buckets(0)[0];
    std::stringstream  out1_str;
    out1_str << (*b1);
    bool equal = (gold1 == out1_str.str());
    STKUNIT_ASSERT_EQUAL ( equal, true );
  }
 
  // Second, update state of bucket until circular cue is filled
  {
    /* Need to set some data in state, rotate look for it, rotate 3 more times
       and look for it again */
    for ( size_t i = 0 ; i != 10 ; ++i )
      bulk.update_field_data_states ();
  }
 
  // Third, checking field_data_valid (...)
  {
    const std::vector< FieldBase * > &field_bases = meta.get_fields();
    STKUNIT_ASSERT_THROW(field_data_valid ( *field_bases[0] , *bulk.buckets(3)[0] , 1 , "error" ) , std::runtime_error);
    STKUNIT_ASSERT_EQUAL(field_data_valid ( *field_bases[0] , *bulk.buckets(0)[0] , 1 , "no_error" ) , true);
    STKUNIT_ASSERT_THROW(field_data_valid ( *field_bases[0] , *bulk.buckets(3)[0] , 99 , "error" ) , std::runtime_error);
 
    // Set up a second mesh
 
    MetaData meta2 ( entity_names );
    BulkData bulk2( meta2 , pm , max_bucket_size );
 
    ScalarFieldType & temperature2 =
      meta2.declare_field < ScalarFieldType > ( "temperature2" , number_of_states );
    ScalarFieldType & volume2 =
      meta2.declare_field < ScalarFieldType > ( "volume2" , number_of_states );
    Part  & universal2     = meta2.universal_part ();
    put_field ( temperature2 , NODE_RANK , universal2 );
    put_field ( volume2 , element_rank  , universal2 );
    meta2.commit();
 
    // Cover line containing messsage for wrong MetaData used
    const std::vector< FieldBase * > &field_bases2 = meta2.get_fields();
    STKUNIT_ASSERT_THROW(field_data_valid ( *field_bases2[0] , *bulk.buckets(0)[0] , 1 , "error" ) , std::runtime_error);
  }
 
  // Fourth, check has_superset (...) and membership functions
  {
    PartVector tmp(2) ;
    tmp[0] = & meta.universal_part();
    tmp[1] = & meta.locally_owned_part();
    STKUNIT_ASSERT_EQUAL ( has_superset ( *bulk.buckets(0)[0] , tmp ) , bulk.parallel_size() == 1 );
    STKUNIT_ASSERT ( bulk.buckets(0)[0]->member_any ( tmp ) );
    STKUNIT_ASSERT_EQUAL ( bulk.buckets(0)[0]->member_all ( tmp ) , bulk.parallel_size() == 1 );
    STKUNIT_ASSERT ( bulk.buckets(0)[0]->member ( **meta.get_parts().begin() ) );
  }
}
 
STKUNIT_UNIT_TEST(UnitTestingOfBucket, testGetInvolvedParts)
{
  // Tests to cover get_involved_parts for GetBuckets.cpp - C.Brickley - 12 May 2010
 
  stk_classic::ParallelMachine pm = MPI_COMM_WORLD;
  MPI_Barrier( pm );
 
  const int spatial_dimension = 3;
 
  FEMMetaData meta( spatial_dimension );
  const EntityRank element_rank = meta.element_rank();
  const EntityRank edge_rank    = meta.edge_rank();
 
  PartVector involved_parts(2) ;
  involved_parts[0] = & meta.universal_part();
  involved_parts[1] = & meta.locally_owned_part();
 
  Part & partLeft_1 = stk_classic::mesh::fem::declare_part<shards::Tetrahedron<4> >( meta, "block_left_1" );
 
  Part & partLeft_2 = stk_classic::mesh::fem::declare_part<shards::Tetrahedron<4> >( meta, "block_left_2" );
 
  meta.commit();
 
  PartVector union_parts;
  union_parts.push_back(&partLeft_1);
  union_parts.push_back(&partLeft_2);
 
  BulkData bulk( FEMMetaData::get_meta_data(meta) , pm , 100 );
  PartVector add_part4, no_part;
  add_part4.push_back ( &partLeft_1 );
 
  bulk.modification_begin();
  int  size , rank;
  rank = stk_classic::parallel_machine_rank( pm );
  size = stk_classic::parallel_machine_size( pm );
 
  for ( int id_base = 0 ; id_base < 99 ; ++id_base )
  {
    int new_id = size * id_base + rank + 1;
    bulk.declare_entity( 3 , new_id , add_part4 );
    bulk.declare_entity( NODE_RANK , new_id , no_part );
  }
 
  bulk.modification_end();
 
  const std::vector<Bucket*> & buckets = bulk.buckets( element_rank );
 
  std::vector<Bucket*>::const_iterator k;
 
  k = buckets.begin();
 
  //test 1 covers aecond section of "if" statement in while loop
  get_involved_parts( union_parts, **k, involved_parts);
 
  //test 2 covers union_parts.size() = 0
  PartVector union_parts2(0) ;
  get_involved_parts( union_parts2, **k, involved_parts);
 
  //test 3 covers first section of "if" statement in while loop
  const std::vector<Bucket*> & buckets2 = bulk.buckets( NODE_RANK );
  std::vector<Bucket*>::const_iterator k2;
 
  k2 = buckets2.begin();
  get_involved_parts( union_parts, **k2, involved_parts);
 
  // tests on throw_error and BucketIterator in bucket.cpp/hpp
 
  FEMMetaData meta2 (spatial_dimension);
  BulkData bulk2( FEMMetaData::get_meta_data(meta2) , pm , 4 );
 
  unsigned number_of_states = 4;
 
  ScalarFieldType & temperature2 =
    meta2.declare_field < ScalarFieldType >("temperature2" , number_of_states);
  ScalarFieldType & volume2 =
 
    meta2.declare_field < ScalarFieldType >("volume2", number_of_states);
  Part  & universal = meta2.universal_part ();
  put_field ( temperature2 , NODE_RANK , universal );
  put_field ( volume2 , element_rank  , universal );
 
  meta2.commit();
 
  bulk2.modification_begin();
  bulk2.declare_entity( edge_rank, rank+1 , no_part );
  bulk2.modification_end();
}
 
STKUNIT_UNIT_TEST(UnitTestingOfBucket, testBucket2)
{
  // Tests to cover print, has_superset and BucketLess::operator() for Buckets.cpp - C.Brickley - 2nd June 2010
 
  stk_classic::ParallelMachine pm = MPI_COMM_WORLD;
  MPI_Barrier( pm );
 
  const int spatial_dimension = 3;
  FEMMetaData meta( spatial_dimension );
  const EntityRank element_rank = meta.element_rank();
 
  PartVector involved_parts(2) ;
  involved_parts[0] = & meta.universal_part();
  involved_parts[1] = & meta.locally_owned_part();
 
  Part & partLeft_1 = meta.declare_part("block_left_1", element_rank);
 
  Part & partLeft_3 = stk_classic::mesh::fem::declare_part<shards::Tetrahedron<4> >( meta, "block_left_3" );
 
  meta.commit();
 
  BulkData bulk( FEMMetaData::get_meta_data(meta) , pm , 100 );
  std::vector<Part *>  add_part4;
  add_part4.push_back ( &partLeft_1 );
 
  bulk.modification_begin();
  int  size , rank;
  rank = stk_classic::parallel_machine_rank( pm );
  size = stk_classic::parallel_machine_size( pm );
 
  for ( int id_base = 0 ; id_base < 99 ; ++id_base )
  {
    int new_id = size * id_base + rank;
    bulk.declare_entity( 3 , new_id+1 , add_part4 );
  }
 
  bulk.modification_end();
 
  const std::vector<Bucket*> & buckets2 = bulk.buckets( element_rank );
 
  std::vector<Bucket*>::const_iterator k2;
 
  k2 = buckets2.begin();
 
  Bucket& b2 = **k2;
 
  //define a new meta and bulkdata
  std::vector<std::string> entity_names(10);
 
  for ( size_t i = 0 ; i < 10 ; ++i ) {
    std::ostringstream name ;
    name << "EntityRank" << i ;
    entity_names[i] = name.str();
  }
 
  MetaData meta2 ( entity_names );
  BulkData bulk2( meta2 , pm , 4 );
 
  unsigned number_of_states = 4;
 
  ScalarFieldType & temperature2 =
    meta2.declare_field < ScalarFieldType >("temperature2" , number_of_states);
  ScalarFieldType & volume2 =
    meta2.declare_field < ScalarFieldType >("volume2", number_of_states);
  Part  & universal     = meta2.universal_part ();
  put_field ( temperature2 , NODE_RANK , universal );
  put_field ( volume2 , element_rank  , universal );
 
  typedef Field<double>  VectorFieldType;
  typedef Field<double>  ElementNodePointerFieldType;
 
  meta2.commit();
 
  //Test to cover print function in Bucket.cpp
  std::ostringstream oss;
  print(oss, "  ", b2);
 
  //Test to cover has_superset function in Bucket.cpp
  STKUNIT_ASSERT_EQUAL ( has_superset ( b2 , partLeft_3 ) , false );
 
  //Test on BucketLess::operator() in Bucket.cpp/hpp
 
  enum { KEY_TMP_BUFFER_SIZE = 64 };
 
  const unsigned max = ~(0u);
 
  unsigned key_tmp_buffer[ KEY_TMP_BUFFER_SIZE ];
 
  std::vector<unsigned> key_tmp_vector ;
 
  const unsigned key_size = 2 + 3 ;
 
  unsigned * const key =
    ( key_size <= KEY_TMP_BUFFER_SIZE )
    ? key_tmp_buffer
    : ( key_tmp_vector.resize( key_size ) , & key_tmp_vector[0] );
 
 
  key[ key[0] = 3 + 1 ] = max;
 
  {
    unsigned * const k = key + 1 ;
    for ( unsigned i = 0 ; i < 3 ; ++i ) { k[i] = 1 ; }
  }
 
  // FIXME: The code below needs to be fixed or removed
  /*
  impl::BucketImpl::last_bucket_in_family( *k2 );
 
  const unsigned * t = key;
  const Bucket * u = last_bucket;
 
  BucketLess Buck;
 
  bool res = Buck(  &t[0], &u[0] );
 
  STKUNIT_EXPECT_EQUAL( res, false );
  */
}
 
STKUNIT_UNIT_TEST(UnitTestingOfBucket, testEntityComm)
{
  // FIXME: With so much code commented out, this unit-test does
  // not appear to be testing anything.
 
  stk_classic::ParallelMachine pm = MPI_COMM_WORLD;
  MPI_Barrier( pm );
 
  const int spatial_dimension = 3;
  FEMMetaData meta( spatial_dimension );
 
  BulkData bulk ( FEMMetaData::get_meta_data(meta) , pm , 100 );
  std::vector<Part *>  add_part4;
 
  Part & partLeft_1 = stk_classic::mesh::fem::declare_part<shards::Tetrahedron<4> >( meta, "block_left_1" );
  meta.commit();
 
  add_part4.push_back ( &partLeft_1 );
 
  //int rank = stk_classic::parallel_machine_rank( pm );
  // int size = stk_classic::parallel_machine_size( pm );
  PartVector tmp(1);
 
  bulk.modification_begin();
 
  //int id_base = 0;
  //int new_id = size * id_base + rank;
  //  for ( id_base = 0 ; id_base < 93 ; ++id_base )
  //  {
  //   int new_id = size * id_base + rank;
  //   bulk.declare_entity( 0 , new_id+1 , add_part4 );
  //  }
 
  bulk.modification_end();
 
  /*  cout << endl << "Bucket test line 3" << endl ;
  bool result = in_shared(elem);
  if( result) {
     STKUNIT_ASSERT_EQUAL( result , true );
  }
  cout << endl << "Bucket test line 4" << endl ;
 
  result = in_receive_ghost(elem);
  if( result) {
     STKUNIT_ASSERT_EQUAL( result , true );
  }
 
    for ( unsigned p = 0 ; p < p_size ; ++p ) if ( p != p_rank ) {
      cout << endl << "in relation h and p =" << p << endl ;
 
      STKUNIT_ASSERT_EQUAL( in_send_ghost( *elem , p ), false );
      cout << endl << "in relation ii =" << endl
   }
 
  cout << endl << "Bucket test line 5" << endl ;
  result = in_send_ghost(elem);
  if( result) {
     STKUNIT_ASSERT_EQUAL( result , true );
     }
 
  cout << endl << "Bucket test line 6" << endl ;
 
  unsigned proc = rank;
  unsigned procnew = rank+10;
 
  result = in_shared(elem, proc);
  if( result) {
     STKUNIT_ASSERT_EQUAL( result , true );
  }
  cout << endl << "Bucket test line 7" << endl ;  */
}
 
}