![]() | The Settings Menu
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First run your document through LaTeX, as per usual. Then use the file->open menu item to open the auxiliary file that should have been created by LaTeX. Alternatively, you can use the file->recent menu, to select a recently loaded file.
MakeGlossariesGUI will attempt to run either makeindex or xindy, depending on the package option that was passed to the glossaries package in your document. If an error occurs, it will try to work out what the problem is and print a message in the panel.
If there are no problems, you can run LaTeX again1.
If you then edit your document and rerun LaTeX, you can reload the current file in MakeGlossariesGUI using the file->reload menu item.